Making a brain is what we want to do to solve our resource problems, and help us to focus on the things we care about.
We didn't understand birds - but we didn't duplicate them either. I would draw an analogy between duplicating a specific brain and duplicating specific bird. We learned how to fly a while back - but we still don't know where to begin on the project of making a specific bird.
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Anders Sandberg gives a good lecture (Google TechTalk) called "Whole Brain Emulation: The Logical Endpoint of Neuroinformatics?" which responds to some of the points raised here. See youtube