I think the cup holders in cars argument was refuted by this comment to your original post: http://lesswrong.com/lw/h2a/the_cupholder_paradox/8nre
And more generally and perhaps more importantly, this one: http://lesswrong.com/lw/h2a/the_cupholder_paradox/8nsg
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Which way do you think publication bias on the issue goes, anyway?
I wrote a paragraph on that in the post. I predicted a publication bias in favor of positive results, assuming the community is not biased on the particular issue of vaccines & autism. This prediction is probably wrong, but that hypothesis (lack of bias) is what I was testing.