When it comes to evidence, I don't believe Bayes' theorem deals with the real-world problems that arise when considering a hypothesis. For example, it doesn't deal with the "garbage in, garbage out" problem.
If you mean things like the base rate fallacy, then yes it does. If you mean that putting in random numbers for your priors doesn't solve your problems, then there isn't any method of considering evidence that fixes that in principle.
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Absolutely. Otherwise I can't exclude from the domain of "evidence of X" all things which should not incline a rational person to amend their views about X, and I very much want to do that.
Note that something can be "evidence" without being "evidence of X" where X is one specific something. Someone calling in to say their watch stopped is evidence that someone called in and evidence that a watch stopped and so on, just not evidence that Uri Geller has radio-propagated psychic powers.
I agree with you to the extent that Bayes' theorem is not a magic wand that cures all epistemological ills. You don't have to browse this site for too long to come across people advancing silly ideas under the banner of Bayesian inference because they are using it incorrectly. However while it's not a magic wand it's a mathematical truth about how the universe works, and any time you deliberately deviate from Bayes' theorem you are deliberately going wrong as a matter of mathematical fact.
What is actually going on here, assuming you are applying Bayes correctly, is that the prior probability of Uri Geller having radio-propagated psychic powers should be seen as astoundingly low. Far lower than the odds of me winning the lotto twice in a row, for example - let's say one on ten to the fourteenth as a very generous prior probability. If Uri Geller got a lot more phone calls than a skeptic pretending to be a psychic that should tip the scales a little in his favour but nowhere near enough to get P(Uri Geller has psychic powers) up to a level we should take seriously.
The premise "more calls makes psychic powers more likely" is not flawed at all. If we lived in a bizarre universe where Uri Geller really could reach out through your radio and stop your watch then we would indeed see more calls coming in, and if we lived in that bizarre world we should want to believe we lived in that bizarre world. I'm very sure we do not live in that world but that's because the evidence is against it, not because I would dismiss that evidence if it supported it.
If someone believes the Bible is central to question of whether God exists, you can challenge that without having a definition of "evidence" that is informed by Bayes' theorem.
It could be flawed if there are things that effect the number of phone calls other than Geller's proposed psychic powers. One show might get more calls but also have more viewers, and that obviously doesn't make Geller more likely to be psychic during that particular show.
But I am in agreement with you generally with the Uri Geller example. I don't think phone calls to a television show would alone change my mind, but if we did live in a world where he truly did have psychic powers, I would hope that such evidence would lead me to investigate the matter further.