In STEM fields, there is a great deal of necessary knowledge that simply is not in journals or articles, and is carried forward as institutional knowledge passed around among grad students and professors.
Maybe someday someone clever will figure out how to disseminate that knowledge, but it simply isn't there yet.
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Yes I think even in math a lot of what is called "mathematical sophistication" is implicit knowledge that's hard to communicate without being steeped in the social context in which math is developed and read.
As an example, do you mean something like correctly understanding how to "abuse" mathematical notation in a way that remains rigorous?