the Kolmogorov complexity of a definition of an equivalence relation which tells us that an AND gate implemented in a MOSFET is equivalent to an AND gate implemented in a neuron is equivalent to an AND gate implemented in desert rocks
Isn't that only a problem for those who answer "functions" to question 5? Desert-rocks-AND-gate and MOSFET-AND-gate are functionally-equivalent by definition, but if you're not excluding side-effects it's obvious that they're not computationally equivalent.
Edit: zaph answered algorithms, so your counter-argument doesn't really target him well.
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Mary still doesn't have to make anything special happen to her brain have knowledge of anything else. She can still understand photosynthesis without photosynthesising.
She can understand the sequence of chemical reactions that comprises the Calvin cycle just as she can understand what neural impulses occur when red light strikes retinal rods, but she can't form the memory of either one occurring within her body.