They've been looking at E. coli for 64000k+ generations. That's where we should see something

There's your flaw in reasoning. 64000k is relatively tiny. But more importantly bacteria's today are highly optimized while bacteria's 2 billion years ago when the flagellum evolved weren't. I would expect more innovation back then.

One example for that optimization is that human's carry around a lot of pseudogenes. Those are sequences that were genes and stopped being genes when a few mutations happened.

Carrying those sequences around is good for innovation as far as producing new proteins that serve new functions.

The strong evolution pressure that exists on E-coli today results in E-coli not carrying around a lot of pseudogenes. Generally being near strong local maxima also reduces innovation.

If you want to look at new bacterias with radical innovations the one's in Three Mile Island.

Consider humans have 50MM new functioning nucleotides developed over 6 million years from our 'common ape' ancestor: where are the new unique functioning nucleotides (say, 1000) in the various human haplogroups? Evolution in humans seems to have stopped.

No evolution in humans hasn't stopped.

It is strong enough that natives skin color strongly correlates to their local sunlight patterns. We don't only have black native people at the equator in Africa but also in South America. Vitamin D3 seems to be important enough to exert enough evolutionary pressure.

In area's with high malaria density in West Africa 25% have the sickle cell trait. It's has much lower prevelance in Western Europe where there's less malaria.

Western Europe has much higher rates of lactose intolerance than other human populations.

Those are the examples I can bring on the top of my head. There are likely other differences. Due to the current academic climate the reasons for the genetic differences between different human haplogroups happen to be underresearched. I would predict that this changes in the next ten years but you might have to read the relevant papers in Chinese ;)

Evolution in humans seems to have stopped.

The 10,000 Year Explosion disagrees; to quote my own earlier summary of it:

60,000 years ago, there were something like a quarter of a million modern humans. 3,000 years ago, thanks to the higher food yields allowed by agriculture, there were 60 million humans. A larger population means there's more genetic variance: mutations that had previously occurred every 10,000 years or so were now showing up every 400 years. The changed living conditions also began to select for different genes. A "gene sweep" is a process where beneficial alleles increase in frequency, "sweeping through" the population until everyone has them. Hundreds of these are still ongoing today. For European and Chinese samples, the sweeps' rate of origination peaked at about 5,000 years ago and at 8,500 years ago for one African sample. While the full functions of these alleles are still not known, it is known that most involve changes in metabolism and digestion, defenses against infectious disease, reproduction, DNA repair, or in the central nervous system.

The development of agriculture led, among other things, to a different mix of foods, frequently less healthy than the one enjoyed by hunter-gatherers. For instance, vitamin D was poorly available in the new diet. However, it is also created by ultraviolet radiation from the sun interacting with our skin. After the development of agriculture, several new mutations showed up that led to people in the areas more distant from the equator having lighter skins. There is also evidence of genes that reduce the negative effects associated with e.g. carbohydrates and alcohol. Today, people descending from populations that haven't farmed as long, like Australian Aborigines and many Amerindians, have a distinctive track record of health problems when exposed to Western diets. DNA retrieved from skeletons indicates that 7,000 to 8,000 years ago, no-one in central and northern Europe had the gene for lactose tolerance. 3,000 years, about 25 percent of people in central Europe had it. Today, about 80 percent of the central and northern European population carries the gene. [...]

People in certain areas have more mutations giving them a resistance to malaria than people in others. The human skeleton has become more lightly built, more so in some populations. Skull volume has decreased apparently in all populations: in Europeans it is down 10 percent from the hight point about 20,000 years ago. For some reason, Europeans also have a lot of variety in eye and hair color, whereas most of the rest of the world has dark eyes and dark hair, implying some Europe-specific selective pressure that happened to also affect those.

As for cognitive changes: there are new versions of neurotransmitter receptors and transporters. Several of the alleles have effects on serotonin. There are new, mostly regional, versions of genes that affect brain development: axon growth, synapse formation, formation of the layers of the cerebral cortex, and overall brain growth. Evidence from genes affecting both brain development and muscular strength, as well as our knowledge of the fact that humans in 100,000 BC had stronger muscles than we do have today, suggests that we may have traded off muscle strength for higher intelligence. There are also new versions of genes affecting the inner ear, implying that our hearing may still be adapting to the development of language - or that specific human populations might even be adapting to characteristics of their local languages or language families.

Evolution in humans seems to have stopped.

White skin, blue eyes, lactose digestion in adulthood... (some people say even consciousness)... are relatively recent adaptations.

What did you expect, tentacles? ;)