Possibly offtopic, but a neat project with interesting analogy to mind uploading:
Some people managed to scan, using a microscope, a MOS 6502 microprocessor (Apple II, C64, NES), and simulate it at the level of single transistors. This neatly circumvented all the problems with inaccurate emulation, unknown opcodes etc., and even allowed them to run actual Atari 2600 games without having to know anything about 6502's inner workings.
Presentation slides about the project are here.
Yes, late, and yes, slow. But it's what you have to do when you don't understand the thing you wish to duplicate. Making a brain is one thing, making a specific brain is another.
Making a brain is what we want to do to solve our resource problems, and help us to focus on the things we care about.
We didn't understand birds - but we didn't duplicate them either. I would draw an analogy between duplicating a specific brain and duplicating specific bird. We learned how to fly a while back - but we still don't know where to begin on the project of making a specific bird.