Today's post, Reductionism was originally published on 16 March 2008. A summary (taken from the LW wiki):
We build models of the universe that have many different levels of description. But so far as anyone has been able to determine, the universe itself has only the single level of fundamental physics - reality doesn't explicitly compute protons, only quarks.
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I thought I had clearly explained it in my original top-level comment: the underlying structure is irrelevant for the entities a few levels removed.
And if it did, it wouldn't matter for atomic physics and up.
I understand what you are saying. Why are you saying it? What is interesting about the idea that higher levels of your map are agnostic to lower level details? What is the query?