That's right, we (the developers of the site) think the numbers should not be taken too seriously, but they help to order the evidence for and against in terms of strength. Any simple format for presenting information will have its own biases and an evidencechart will have many limitations, but we think it's nice that it's so concise relative to prose. A full argument map would provide more logical structure, but is much more difficult and time-consuming to create.
Looking at that sleep one... I thought it looked nice initially, but then I tried to look at the information in more detail, and I became less impressed. The text was doing all the semantic heavy-lifting.
Much of the heavy lifting is also done by the assignment of numbers and colors to indicate the impact of the experiment on a hypothesis. That's much easier to grok as a whole than plain text. I can also easily make quick judgments from the chart that are much more difficult to do from a review paper, such as "later experiments generally oppose this hypothesis, and only early experiments strongly support it" (among those in the chart, of course).
More: alexholcombe.wordpress.com/2010/09/02/make-evidence-charts-not-review-papers/
Example: What is the role of sleep on hippocampus-dependent memory consolidation?
I thought this was an interesting idea. Do you think it would be possible and useful to create an evidence chart for risks from AI, existential risks in general and other topics on lesswrong?