A conversation between pchvykov and jow on alternative research environments. This post is based on an audio transcript that we have edited with the help of Claude. We planned this as an experiment for ourselves in "thinking in public". Also, pchvykov is now organizing a "mindful research" retreat—related to the ideas discussed here—this summer at the INTP institute in the Pyrenees mountains (border of France and Spain), starting July 20, 2025. More details at the end.
jow: So I guess you should start by saying what you think's wrong in academia, because I feel academics already have, in some sense a very, very good job. Compared to many...
pchvykov: Yeah. My sense is they're... (read 5504 more words →)
In the case of epigenetic memory based on freely-diffusing factors, the alternative "stable" states can probably be thought of as long-lived metastable states in "real" stochastic system, which become stable fixed points in the limit as the number of particles N goes to infinity. In models, the switching time often grows exponentially with the number of particles. You may enjoy https://arxiv.org/abs/q-bio/0410003 or https://journals.aps.org/prl/abstract/10.1103/PhysRevLett.115.208101.
For memory based on chemical modifications embedded along the genome, like DNA methylation, there isn't really a "large N" limit to take, and in my view things are less settled. You may enjoy https://pubmed.ncbi.nlm.nih.gov/17512413/ or (shameless plug) https://www.science.org/doi/10.1126/science.adg3053